| Transcriptomic profiling of cardiac tissues from SARS‐CoV‐2 patients identifies DNA damage A Kulasinghe, N Liu, CW Tan, J Monkman, JE Sinclair, DD Bhuva, ... Immunology 168 (3), 403-419, 2023 | 25 | 2023 |
| Transient naive reprogramming corrects hiPS cells functionally and epigenetically S Buckberry, X Liu, D Poppe, JP Tan, G Sun, J Chen, TV Nguyen, ... Nature 620 (7975), 863-872, 2023 | 18 | 2023 |
| Molecular insights into regulatory T-cell adaptation to self, environment, and host tissues: Plasticity or loss of function in autoimmune disease CY Brown, T Sadlon, CM Hope, YY Wong, S Wong, N Liu, H Withers, ... Frontiers in Immunology 11, 1269, 2020 | 16 | 2020 |
| Compartmentalized spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma identifies immune checkpoint molecules and tumor necrosis factor … H Sadeghirad, N Liu, J Monkman, N Ma, BB Cheikh, N Jhaveri, CW Tan, ... Frontiers in immunology 14, 1135489, 2023 | 8 | 2023 |
| Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C N Liu, WY Low, H Alinejad-Rokny, S Pederson, T Sadlon, S Barry, ... Epigenetics & Chromatin 14 (1), 41, 2021 | 7 | 2021 |
| vissE: A versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis DD Bhuva, CW Tan, N Liu, HJ Whitfield, N Papachristos, SC Lee, ... BMC bioinformatics 25 (1), 64, 2024 | 6 | 2024 |
| standR: spatial transcriptomic analysis for GeoMx DSP data N Liu, DD Bhuva, A Mohamed, M Bokelund, A Kulasinghe, CW Tan, ... Nucleic Acids Research 52 (1), e2-e2, 2024 | 5 | 2024 |
| 3DFAACTS-SNP: using regulatory T cell-specific epigenomics data to uncover candidate mechanisms of type 1 diabetes (T1D) risk N Liu, T Sadlon, YY Wong, S Pederson, J Breen, SC Barry Epigenetics & Chromatin 15 (1), 24, 2022 | 5 | 2022 |
| Library size confounds biology in spatial transcriptomics data DD Bhuva, CW Tan, A Salim, C Marceaux, MA Pickering, J Chen, ... Genome Biology 25 (1), 99, 2024 | 3 | 2024 |
| Parallel recovery of chromatin accessibility and gene expression dynamics from frozen human regulatory T cells YY Wong, JE Harbison, CM Hope, B Gundsambuu, KA Brown, SW Wong, ... Scientific Reports 13 (1), 5506, 2023 | 3 | 2023 |
| Quality control measures for placental sample purity in DNA methylation array analyses Q Wan, SYL Leemaqz, SM Pederson, D McCullough, DC McAninch, ... Placenta 88, 8-11, 2019 | 3 | 2019 |
| In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection CW Tan, J Chen, N Liu, DD Bhuva, T Blick, J Monkman, C Cooper, ... EBioMedicine 101, 2024 | 1 | 2024 |
| Topologically associating domains in the POLLED region are the same for Angus‐and Brahman‐specific Hi‐C reads from F1 hybrid fetal tissue JE Aldersey, N Liu, R Tearle, WY Low, J Breen, JL Williams, CDK Bottema Animal Genetics 54 (4), 536-543, 2023 | 1 | 2023 |
| vissE. cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis A Mohamed, DD Bhuva, S Lee, N Liu, CW Tan, MJ Davis Nucleic acids research 51 (W1), W593-W600, 2023 | 1 | 2023 |
| Spatial profiling of pediatric rhabdomyosarcoma to elucidate their immunosuppressive tumor microenvironment C Tu, CW Tan, N Liu, A Kulasinghe, F Souza-Fonseca-Guimaraes Cancer Research 84 (6_Supplement), 73-73, 2024 | | 2024 |
| Spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma revealed immune cell type infiltration into the TME as a predictor of immunotherapy … H Sadeghirad, CW Tan, N Liu, J Monkman, C Cooper, K O’Byrne, M Davis, ... Cancer Research 84 (6_Supplement), 1154-1154, 2024 | | 2024 |
| hoodscanR: profiling single-cell neighborhoods in spatial transcriptomics data N Liu, J Martin, DD Bhuva, J Chen, M Li, SC Lee, M Kharbanda, J Cheng, ... bioRxiv, 2024.03. 26.586902, 2024 | | 2024 |
| Spatial profiling of the tumor microenvironment in head and neck cancer identifies immune checkpoints and proteins involved in cell death signaling biomarkers of immunotherapy … H Sadeghirad, N Liu, J Monkman, CW Tan, C Cooper, J Caldera, ... Cancer Research 83 (7_Supplement), 4626-4626, 2023 | | 2023 |
| standR: a Bioconductor package for analysing transcriptomic Nanostring GeoMx DSP data N Liu, DD Bhuva, A Mohamed, M Bokelund, A Kulasinghe, CW Tan, ... bioRxiv, 2023.04. 23.538017, 2023 | | 2023 |
| Tianyi Zhao, Harbin Institute of Technology, China B Xu, M Zheng, A Kulasinghe, H Sadeghirad, N Liu, J Monkman, N Ma, ... | | 2023 |
