A P Francisco
A P Francisco
INESC-ID / IST, Universidade de Lisboa
Verified email at tecnico.pt
Title
Cited by
Cited by
Year
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach
AP Francisco, M Bugalho, M Ramirez, JA Carriço
BMC bioinformatics 10 (1), 1-15, 2009
4472009
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço
BMC bioinformatics 13 (1), 87, 2012
4142012
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
2592014
GrapeTree: Visualization of core genomic relationships among 100,000 bacterial pathogens
Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ...
Genome research 28 (9), 1395-1404, 2018
2562018
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ...
Nucleic acids research 39 (suppl_1), D136-D140, 2011
2182011
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ...
Nucleic acids research 36 (suppl_1), D132-D136, 2007
1892007
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
M Nascimento, A Sousa, M Ramirez, AP Francisco, JA Carriço, C Vaz
Bioinformatics 33 (1), 128-129, 2017
1742017
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
B Ribeiro-Gonçalves, AP Francisco, C Vaz, M Ramirez, JA Carriço
Nucleic acids research 44 (W1), W246-W251, 2016
902016
Quick hypervolume
LMS Russo, AP Francisco
IEEE Transactions on Evolutionary Computation 18 (4), 481-502, 2014
892014
Betweenness centrality in Delay Tolerant Networks: a survey
N Magaia, AP Francisco, P Pereira, M Correia
Ad Hoc Networks 33, 284-305, 2015
412015
Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis
S Vinga, AM Carvalho, AP Francisco, LMS Russo, JS Almeida
Algorithms for Molecular Biology 7 (1), 1-12, 2012
352012
Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores
JP Gonçalves, AP Francisco, Y Moreau, SC Madeira
PloS one 7 (11), e49634, 2012
342012
Using machine learning to improve the prediction of functional outcome in ischemic stroke patients
M Monteiro, AC Fonseca, AT Freitas, TP e Melo, AP Francisco, JM Ferro, ...
IEEE/ACM transactions on computational biology and bioinformatics 15 (6 …, 2018
332018
Spanning edge betweenness
AS Teixeira, PT Monteiro, JA Carriço, M Ramirez, AP Francisco
Workshop on Mining and Learning with Graphs 24, 27-31, 2013
282013
Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis
AS Teixeira, PT Monteiro, JA Carriço, M Ramirez, AP Francisco
Plos one 10 (3), e0119315, 2015
192015
Real-time integration of building energy data
D Anjos, P Carreira, AP Francisco
2014 IEEE International Congress on Big Data, 250-257, 2014
182014
Extending quick hypervolume
LMS Russo, AP Francisco
Journal of Heuristics 22 (3), 245-271, 2016
172016
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses
JP Gonçalves, AP Francisco, NP Mira, MC Teixeira, I Sá-Correia, ...
Bioinformatics 27 (22), 3149-3157, 2011
172011
Clique analysis of query log graphs
AP Francisco, R Baeza-Yates, AL Oliveira
International Symposium on String Processing and Information Retrieval, 188-199, 2008
132008
Gelly-scheduling: Distributed graph processing for service placement in community networks
ME Coimbra, M Selimi, AP Francisco, F Freitag, L Veiga
Proceedings of the 33rd Annual ACM Symposium on Applied Computing, 151-160, 2018
112018
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Articles 1–20