| Discovery and revision of Arabidopsis genes by proteogenomics NE Castellana, SH Payne, Z Shen, M Stanke, V Bafna, SP Briggs Proceedings of the national academy of sciences 105 (52), 21034-21038, 2008 | 320 | 2008 |
| Proteogenomics to discover the full coding content of genomes: a computational perspective N Castellana, V Bafna Journal of proteomics 73 (11), 2124-2135, 2010 | 187 | 2010 |
| Proteogenomic database construction driven from large scale RNA-seq data S Woo, SW Cha, G Merrihew, Y He, N Castellana, C Guest, M MacCoss, ... Journal of proteome research 13 (1), 21-28, 2014 | 131 | 2014 |
| An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays NE Castellana, Z Shen, Y He, JW Walley, SP Briggs, V Bafna Molecular & Cellular Proteomics 13 (1), 157-167, 2014 | 96 | 2014 |
| Template proteogenomics: sequencing whole proteins using an imperfect database NE Castellana, V Pham, D Arnott, JR Lill, V Bafna Molecular & Cellular Proteomics 9 (6), 1260-1270, 2010 | 62 | 2010 |
| Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti‐lymphotoxin‐α antibody NE Castellana, K McCutcheon, VC Pham, K Harden, A Nguyen, J Young, ... Proteomics 11 (3), 395-405, 2011 | 35 | 2011 |
| INDI—integrated nanobody database for immunoinformatics P Deszyński, J Młokosiewicz, A Volanakis, I Jaszczyszyn, N Castellana, ... Nucleic Acids Research 50 (D1), D1273-D1281, 2022 | 27 | 2022 |
| Plant proteogenomics: from protein extraction to improved gene predictions B Chapman, N Castellana, A Apffel, R Ghan, GR Cramer, M Bellgard, ... Proteomics for Biomarker Discovery, 267-294, 2013 | 16 | 2013 |
| Serum Proteomics Expands on Identifying More High-Affinity Antibodies in Immunized Rabbits Than Deep B-Cell Repertoire Sequencing Alone SR Bonissone, T Lima, K Harris, L Davison, B Avanzino, N Trinklein, ... BioRxiv, 833871, 2019 | 9 | 2019 |
| MORPH-PRO: a novel algorithm and web server for protein morphing NE Castellana, A Lushnikov, P Rotkiewicz, N Sefcovic, PA Pevzner, ... Algorithms for Molecular Biology 8, 1-9, 2013 | 9 | 2013 |
| Proteo-genomic analysis identifies two major sites of vulnerability on Ebolavirus glycoprotein for neutralizing antibodies in convalescent human plasma P Gilchuk, A Guthals, SR Bonissone, K Huang, BM Gunn, G Alter, ... Frontiers in immunology 12, 706757, 2021 | 5 | 2021 |
| Systematic analysis of human antibody response to ebolavirus glycoprotein shows high prevalence of neutralizing public clonotypes EC Chen, P Gilchuk, SJ Zost, PA Ilinykh, E Binshtein, K Huang, L Myers, ... Cell reports 42 (4), 2023 | 3 | 2023 |
| Systematic analysis of human antibody response to ebolavirus glycoprotein reveals high prevalence of neutralizing public clonotypes EC Chen, P Gilchuk, SJ Zost, PA Ilinykh, E Binshtein, K Huang, L Myers, ... bioRxiv, 2022.01. 12.476089, 2022 | 3 | 2022 |
| Relaxing haplotype block models for association testing N Castellana, K Dhamdhere, S Sridhar, R Schwartz Biocomputing 2006, 454-466, 2006 | 3 | 2006 |
| De novo sequencing and construction of a unique antibody for the recognition of alternative conformations of cytochrome c in cells F Tomasina, J Martínez, A Zeida, ML Chiribao, V Demicheli, A Correa, ... Proceedings of the National Academy of Sciences 119 (47), e2213432119, 2022 | 1 | 2022 |
| Proteogenomics: Applications of mass spectrometry at the interface of genomics and proteomics N Castellana University of California, San Diego, 2012 | 1 | 2012 |
| Method for antibody identification from protein mixtures N Castellana, S Bonissone, A Patel US Patent App. 18/481,945, 2024 | | 2024 |
| Temporal dynamics of the serological compartment of rabbit antibody repertoires A Patel, SR Bonissone, N Castellana The Journal of Immunology 202 (1_Supplement), 123.16-123.16, 2019 | | 2019 |
| Proteomic analysis of the serum antibody repertoire: a glimpse of the hidden repertoire. S Bonissone, A Patel, T Lima, N Castellana MOLECULAR BIOLOGY OF THE CELL 29 (26), 2018 | | 2018 |
| Resurrecting an antibody against an alternative conformation of cytochrome c: the recombinant mAb 1D3 R Radi, F Tomasina, L Piacenza, N Castellana, M Goff, T Cooper, ... Free Radical Biology and Medicine 128, S91, 2018 | | 2018 |
