| Fluctuation relations of fitness and information in population dynamics TJ Kobayashi, Y Sughiyama Physical review letters 115 (23), 238102, 2015 | 41 | 2015 |
| Pathwise thermodynamic structure in population dynamics Y Sughiyama, TJ Kobayashi, K Tsumura, K Aihara Physical Review E 91 (3), 032120, 2015 | 30 | 2015 |
| Steady-state thermodynamics for population growth in fluctuating environments Y Sughiyama, TJ Kobayashi Physical Review E 95 (1), 012131, 2017 | 16 | 2017 |
| Kinetic derivation of the Hessian geometric structure in chemical reaction networks TJ Kobayashi, D Loutchko, A Kamimura, Y Sughiyama Physical Review Research 4 (3), 033066, 2022 | 14 | 2022 |
| Hessian geometric structure of chemical thermodynamic systems with stoichiometric constraints Y Sughiyama, D Loutchko, A Kamimura, TJ Kobayashi Physical Review Research 4 (3), 033065, 2022 | 14 | 2022 |
| Stochastic and information-thermodynamic structures of population dynamics in a fluctuating environment TJ Kobayashi, Y Sughiyama Physical Review E 96 (1), 012402, 2017 | 14 | 2017 |
| Lineage EM algorithm for inferring latent states from cellular lineage trees S Nakashima, Y Sughiyama, TJ Kobayashi Bioinformatics 36 (9), 2829-2838, 2020 | 12 | 2020 |
| Hessian geometry of nonequilibrium chemical reaction networks and entropy production decompositions TJ Kobayashi, D Loutchko, A Kamimura, Y Sughiyama Physical Review Research 4 (3), 033208, 2022 | 11 | 2022 |
| Chemical Thermodynamics for Growing Systems Y Sughiyama, A Kamimura, D Loutchko, TJ Kobayashi arXiv preprint arXiv:2201.09417, 2022 | 10 | 2022 |
| Quantum extension of variational Bayes inference H Miyahara, Y Sughiyama Physical Review A 98 (2), 022330, 2018 | 10 | 2018 |
| Motif analysis for small-number effects in chemical reaction dynamics N Saito, Y Sughiyama, K Kaneko The Journal of chemical physics 145 (9), 2016 | 10 | 2016 |
| Fitness response relation of a multitype age-structured population dynamics Y Sughiyama, S Nakashima, TJ Kobayashi Physical Review E 99 (1), 012413, 2019 | 9 | 2019 |
| Deterministic quantum annealing expectation-maximization algorithm H Miyahara, K Tsumura, Y Sughiyama Journal of Statistical Mechanics: Theory and Experiment 2017 (11), 113404, 2017 | 7 | 2017 |
| Extended Jarzynski equality in general Langevin system Y Sughiyama, M Ohzeki Physica E: Low-dimensional Systems and Nanostructures 43 (3), 790-793, 2011 | 7 | 2011 |
| The explicit form of the rate function for semi-Markov processes and its contractions Y Sughiyama, TJ Kobayashi Journal of Physics A: Mathematical and Theoretical 51 (12), 125001, 2018 | 6 | 2018 |
| Nonequilibrium work relation in a macroscopic system Y Sughiyama, M Ohzeki Journal of Statistical Mechanics: Theory and Experiment 2013 (04), P04012, 2013 | 6 | 2013 |
| Variational principle in Langevin processes Y Sughiyama, M Ohzeki Interdisciplinary Information Sciences 19 (1), 93-99, 2013 | 6 | 2013 |
| Information geometry of dynamics on graphs and hypergraphs TJ Kobayashi, D Loutchko, A Kamimura, SA Horiguchi, Y Sughiyama Information Geometry, 1-70, 2023 | 5 | 2023 |
| Fitness gain of individually sensed information by cells TJ Kobayashi, Y Sughiyama Entropy 21 (10), 1002, 2019 | 5 | 2019 |
| Relaxation of the em algorithm via quantum annealing for gaussian mixture models H Miyahara, K Tsumura, Y Sughiyama 2016 IEEE 55th Conference on Decision and Control (CDC), 4674-4679, 2016 | 4 | 2016 |
