El-ad David Amir
El-ad David Amir
Astrolabe Diagnostics, Inc.
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Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
SC Bendall, EF Simonds, P Qiu, ED Amir, PO Krutzik, R Finck, ...
Science 332 (6030), 687-696, 2011
Data-driven phenotypic dissection of AML reveals progenitor-like cells that correlate with prognosis
JH Levine, EF Simonds, SC Bendall, KL Davis, DA El-ad, MD Tadmor, ...
Cell 162 (1), 184-197, 2015
viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
ED Amir, KL Davis, MD Tadmor, EF Simonds, JH Levine, SC Bendall, ...
Nature biotechnology 31 (6), 545-552, 2013
Innate immune landscape in early lung adenocarcinoma by paired single-cell analyses
Y Lavin, S Kobayashi, A Leader, ED Amir, N Elefant, C Bigenwald, ...
Cell 169 (4), 750-765. e17, 2017
Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
SC Bendall, KL Davis, ED Amir, MD Tadmor, EF Simonds, TJ Chen, ...
Cell 157 (3), 714-725, 2014
Single-cell immune landscape of human atherosclerotic plaques
DM Fernandez, AH Rahman, NF Fernandez, A Chudnovskiy, ED Amir, ...
Nature medicine 25 (10), 1576-1588, 2019
Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm
ER Zunder, R Finck, GK Behbehani, ED Amir, S Krishnaswamy, ...
Nature protocols 10 (2), 316-333, 2015
Host-protozoan interactions protect from mucosal infections through activation of the inflammasome
A Chudnovskiy, A Mortha, V Kana, A Kennard, JD Ramirez, A Rahman, ...
Cell 167 (2), 444-456. e14, 2016
Highly multiplexed profiling of single-cell effector functions reveals deep functional heterogeneity in response to pathogenic ligands
Y Lu, Q Xue, MR Eisele, ES Sulistijo, K Brower, L Han, ED Amir, D Pe’er, ...
Proceedings of the National Academy of Sciences 112 (7), E607-E615, 2015
Multimodal mapping of the tumor and peripheral blood immune landscape in human pancreatic cancer
NG Steele, ES Carpenter, SB Kemp, VR Sirihorachai, S The, L Delrosario, ...
Nature Cancer 1 (11), 1097-1112, 2020
Protein barcodes enable high-dimensional single-cell CRISPR screens
A Wroblewska, M Dhainaut, B Ben-Zvi, SA Rose, ES Park, EAD Amir, ...
Cell 175 (4), 1141-1155. e16, 2018
Comprehensive immune monitoring of clinical trials to advance human immunotherapy
FJ Hartmann, J Babdor, PF Gherardini, EAD Amir, K Jones, B Sahaf, ...
Cell reports 28 (3), 819-831. e4, 2019
Development of a comprehensive antibody staining database using a standardized analytics pipeline
ED Amir, B Lee, P Badoual, M Gordon, XV Guo, M Merad, AH Rahman
Frontiers in immunology 10, 1315, 2019
Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
D Michlmayr, TR Pak, AH Rahman, EAD Amir, EY Kim, S Kim‐Schulze, ...
Molecular systems biology 14 (8), e7862, 2018
Differentiable, multi‐dimensional, knowledge‐based energy terms for torsion angle probabilities and propensities
EAD Amir, N Kalisman, C Keasar
Proteins: Structure, Function, and Bioinformatics 72 (1), 62-73, 2008
Enhancement of beta-sheet assembly by cooperative hydrogen bonds potential
A Levy-Moonshine, ED Amir, C Keasar
Bioinformatics 25 (20), 2639-2645, 2009
High-dimensional CyTOF analysis of dengue virus–infected human DCs reveals distinct viral signatures
RE Hamlin, A Rahman, TR Pak, K Maringer, I Mena, D Bernal-Rubio, ...
JCI insight 2 (13), 2017
Full spectrum flow cytometry and mass cytometry: A 32‐marker panel comparison
MC Jaimes, M Leipold, G Kraker, E Amir, H Maecker, J Lannigan
Cytometry Part A 101 (11), 942-959, 2022
Average overlap frequency: a simple metric to evaluate staining quality and community identification in high dimensional mass cytometry experiments
ED Amir, XV Guo, O Mayovska, AH Rahman
Journal of immunological methods 453, 20-29, 2018
Deep analysis of the peripheral immune system in IBD reveals new insight in disease subtyping and response to monotherapy or combination therapy
R Kosoy, S Kim-Schulze, A Rahman, JR Friedman, R Huang, LA Peters, ...
Cellular and molecular gastroenterology and hepatology 12 (2), 599-632, 2021
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