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Huaiyu Mi
Huaiyu Mi
Verified email at usc.edu
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Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
202462001
The gene ontology resource: 20 years and still GOing strong
Gene Ontology Consortium
Nucleic acids research 47 (D1), D330-D338, 2019
34782019
PANTHER: a library of protein families and subfamilies indexed by function
PD Thomas, MJ Campbell, A Kejariwal, H Mi, B Karlak, R Daverman, ...
Genome research 13 (9), 2129-2141, 2003
34162003
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
H Mi, A Muruganujan, D Ebert, X Huang, PD Thomas
Nucleic acids research 47 (D1), D419-D426, 2019
26962019
Large-scale gene function analysis with the PANTHER classification system
H Mi, A Muruganujan, JT Casagrande, PD Thomas
Nature protocols 8 (8), 1551-1566, 2013
26422013
The Gene Ontology resource: enriching a GOld mine
Nucleic acids research 49 (D1), D325-D334, 2021
24872021
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
H Mi, X Huang, A Muruganujan, H Tang, C Mills, D Kang, PD Thomas
Nucleic acids research 45 (D1), D183-D189, 2017
22662017
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
H Mi, A Muruganujan, PD Thomas
Nucleic acids research 41 (D1), D377-D386, 2012
18952012
The InterPro protein families and domains database: 20 years on
M Blum, HY Chang, S Chuguransky, T Grego, S Kandasaamy, A Mitchell, ...
Nucleic acids research 49 (D1), D344-D354, 2021
16002021
InterPro in 2017—beyond protein family and domain annotations
RD Finn, TK Attwood, PC Babbitt, A Bateman, P Bork, AJ Bridge, ...
Nucleic acids research 45 (D1), D190-D199, 2017
15292017
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
AL Mitchell, TK Attwood, PC Babbitt, M Blum, P Bork, A Bridge, SD Brown, ...
Nucleic acids research 47 (D1), D351-D360, 2019
14582019
The InterPro protein families database: the classification resource after 15 years
A Mitchell, HY Chang, L Daugherty, M Fraser, S Hunter, R Lopez, ...
Nucleic acids research 43 (D1), D213-D221, 2015
13822015
InterPro in 2011: new developments in the family and domain prediction database
S Hunter, P Jones, A Mitchell, R Apweiler, TK Attwood, A Bateman, ...
Nucleic acids research 40 (D1), D306-D312, 2012
12632012
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v. 14.0)
H Mi, A Muruganujan, X Huang, D Ebert, C Mills, X Guo, PD Thomas
Nature protocols 14 (3), 703-721, 2019
11682019
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
H Mi, D Ebert, A Muruganujan, C Mills, LP Albou, T Mushayamaha, ...
Nucleic acids research 49 (D1), D394-D403, 2021
11172021
The systems biology graphical notation
NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
10482009
The PANTHER database of protein families, subfamilies, functions and pathways
H Mi, B Lazareva-Ulitsky, R Loo, A Kejariwal, J Vandergriff, S Rabkin, ...
Nucleic acids research 33 (suppl_1), D284-D288, 2005
9382005
PANTHER version 10: expanded protein families and functions, and analysis tools
H Mi, S Poudel, A Muruganujan, JT Casagrande, PD Thomas
Nucleic acids research 44 (D1), D336-D342, 2016
9052016
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
7832010
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification
PD Thomas, A Kejariwal, MJ Campbell, H Mi, K Diemer, N Guo, I Ladunga, ...
Nucleic acids research 31 (1), 334-341, 2003
7412003
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