Halogen bond: its role beyond drug–target binding affinity for drug discovery and development Z Xu, Z Yang, Y Liu, Y Lu, K Chen, W Zhu Journal of chemical information and modeling 54 (1), 69-78, 2014 | 353 | 2014 |
Nelfinavir was predicted to be a potential inhibitor of 2019-nCov main protease by an integrative approach combining homology modelling, molecular docking and binding free … Z Xu, C Peng, Y Shi, Z Zhu, K Mu, X Wang, W Zhu BioRxiv, 2020.01. 27.921627, 2020 | 324 | 2020 |
Halogen bonding for rational drug design and new drug discovery Y Lu, Y Liu, Z Xu, H Li, H Liu, W Zhu Expert opinion on drug discovery 7 (5), 375-383, 2012 | 301 | 2012 |
SARS-CoV-2 Omicron RBD shows weaker binding affinity than the currently dominant Delta variant to human ACE2 L Wu, L Zhou, M Mo, T Liu, C Wu, C Gong, K Lu, L Gong, W Zhu, Z Xu Signal transduction and targeted therapy 7 (1), 8, 2022 | 218 | 2022 |
Utilization of halogen bond in lead optimization: a case study of rational design of potent phosphodiesterase type 5 (PDE5) inhibitors Z Xu, Z Liu, T Chen, TT Chen, Z Wang, G Tian, J Shi, X Wang, Y Lu, X Yan, ... Journal of medicinal chemistry 54 (15), 5607-5611, 2011 | 132 | 2011 |
C− X··· H contacts in biomolecular systems: How they contribute to protein− ligand binding affinity Y Lu, Y Wang, Z Xu, X Yan, X Luo, H Jiang, W Zhu The Journal of Physical Chemistry B 113 (37), 12615-12621, 2009 | 102 | 2009 |
Computational insights into the conformational accessibility and binding strength of SARS-CoV-2 spike protein to human angiotensin-converting enzyme 2 C Peng, Z Zhu, Y Shi, X Wang, K Mu, Y Yang, X Zhang, Z Xu, W Zhu The journal of physical chemistry letters 11 (24), 10482-10488, 2020 | 81* | 2020 |
D3Targets-2019-nCoV: a webserver for predicting drug targets and for multi-target and multi-site based virtual screening against COVID-19 Y Shi, X Zhang, K Mu, C Peng, Z Zhu, X Wang, Y Yang, Z Xu, W Zhu Acta Pharmaceutica Sinica B 10 (7), 1239-1248, 2020 | 80 | 2020 |
Important role of SUMOylation of Spliceosome factors in prostate cancer cells D Wen, Z Xu, L Xia, X Liu, Y Tu, H Lei, W Wang, T Wang, L Song, C Ma, ... Journal of proteome research 13 (8), 3571-3582, 2014 | 78 | 2014 |
Substitution effect of the trifluoromethyl group on the bioactivity in medicinal chemistry: Statistical analysis and energy calculations A Abula, Z Xu, Z Zhu, C Peng, Z Chen, W Zhu, HA Aisa Journal of Chemical Information and Modeling 60 (12), 6242-6250, 2020 | 68 | 2020 |
Parallelization of molecular docking: a review D Dong, Z Xu, W Zhong, S Peng Current Topics in Medicinal Chemistry 18 (12), 1015-1028, 2018 | 66 | 2018 |
D3Pockets: a method and web server for systematic analysis of protein pocket dynamics Z Chen, X Zhang, C Peng, J Wang, Z Xu, K Chen, J Shi, W Zhu Journal of chemical information and modeling 59 (8), 3353-3358, 2019 | 65 | 2019 |
Transgelin-2 as a therapeutic target for asthmatic pulmonary resistance LM Yin, YD Xu, LL Peng, TT Duan, JY Liu, Z Xu, WQ Wang, N Guan, ... Science translational medicine 10 (427), eaam8604, 2018 | 61 | 2018 |
Pterostilbene induces apoptosis and cell cycle arrest in diffuse large B-cell lymphoma cells Y Kong, G Chen, Z Xu, G Yang, B Li, X Wu, W Xiao, B Xie, L Hu, X Sun, ... Scientific reports 6 (1), 37417, 2016 | 61 | 2016 |
Bavachinin, as a novel natural pan-PPAR agonist, exhibits unique synergistic effects with synthetic PPAR-γ and PPAR-α agonists on carbohydrate and lipid metabolism in db/db and … L Feng, H Luo, Z Xu, Z Yang, G Du, Y Zhang, L Yu, K Hu, W Zhu, Q Tong, ... Diabetologia 59, 1276-1286, 2016 | 61 | 2016 |
Force fields and scoring functions for carbohydrate simulation X Xiong, Z Chen, BP Cossins, Z Xu, Q Shao, K Ding, W Zhu, J Shi Carbohydrate research 401, 73-81, 2015 | 61 | 2015 |
Exploring transition pathway and free-energy profile of large-scale protein conformational change by combining normal mode analysis and umbrella sampling molecular dynamics J Wang, Q Shao, Z Xu, Y Liu, Z Yang, BP Cossins, H Jiang, K Chen, J Shi, ... The Journal of Physical Chemistry B 118 (1), 134-143, 2014 | 61 | 2014 |
Stability and characteristics of the halogen bonding interaction in an anion–anion complex: a computational chemistry study G Wang, Z Chen, Z Xu, J Wang, Y Yang, T Cai, J Shi, W Zhu The Journal of Physical Chemistry B 120 (4), 610-620, 2016 | 51 | 2016 |
A knowledge-based halogen bonding scoring function for predicting protein-ligand interactions Y Liu, Z Xu, Z Yang, K Chen, W Zhu Journal of molecular modeling 19, 5015-5030, 2013 | 50 | 2013 |
Structural basis for the Mg2+ recognition and regulation of the CorC Mg2+ transporter Y Huang, F Jin, Y Funato, Z Xu, W Zhu, J Wang, M Sun, Y Zhao, Y Yu, ... Science advances 7 (7), eabe6140, 2021 | 48 | 2021 |