| WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018 | 826 | 2018 |
| WikiPathways: capturing the full diversity of pathway knowledge M Kutmon, A Riutta, N Nunes, K Hanspers, EL Willighagen, A Bohler, ... Nucleic acids research 44 (D1), D488-D494, 2016 | 477 | 2016 |
| Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence K Houston, SM McKim, J Comadran, N Bonar, I Druka, N Uzrek, E Cirillo, ... Proceedings of the National Academy of Sciences 110 (41), 16675-16680, 2013 | 134 | 2013 |
| Proposed guidelines to evaluate scientific validity and evidence for genotype-based dietary advice KA Grimaldi, B van Ommen, JM Ordovas, LD Parnell, JC Mathers, ... Genes & nutrition 12 (1), 1-12, 2017 | 109 | 2017 |
| Rett syndrome–biological pathways leading from MECP2 to disorder phenotypes F Ehrhart, SLM Coort, E Cirillo, E Smeets, CT Evelo, LMG Curfs Orphanet journal of rare diseases 11 (1), 1-13, 2016 | 90 | 2016 |
| A review of pathway-based analysis tools that visualize genetic variants E Cirillo, LD Parnell, CT Evelo Frontiers in genetics 8, 174, 2017 | 74 | 2017 |
| From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results E Cirillo, M Kutmon, M Gonzalez Hernandez, T Hooimeijer, ME Adriaens, ... PloS one 13 (4), e0193515, 2018 | 49 | 2018 |
| Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways A Siddiqa, E Cirillo, SHK Tareen, A Ali, M Kutmon, LMT Eijssen, J Ahmad, ... Genomics 109 (5-6), 408-418, 2017 | 34 | 2017 |
| Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes F Ehrhart, SL Coort, L Eijssen, E Cirillo, EE Smeets, NB Sangani, ... The World Journal of Biological Psychiatry, 2019 | 30 | 2019 |
| New insights in Rett syndrome using pathway analysis for transcriptomics data F Ehrhart, SLM Coort, E Cirillo, E Smeets, CT Evelo, L Curfs Wiener Medizinische Wochenschrift (1946) 166 (11), 346, 2016 | 14 | 2016 |
| Synthetic Observational Health Data with GANs: from slow adoption to a boom in medical research and ultimately digital twins? J Georges-Filteau, E Cirillo arXiv preprint arXiv:2005.13510, 2020 | 10 | 2020 |
| Biological pathways leading from ANGPTL8 to diabetes mellitus–a co-expression network based analysis A Siddiqa, E Cirillo, SHK Tareen, A Ali, M Kutmon, LMT Eijssen, J Ahmad, ... Frontiers in physiology 9, 1841, 2018 | 7 | 2018 |
| Generative Adversarial Networks Applied to Observational Health Data J Georges-Filteau, E Cirillo | 2 | 2020 |
| Network analysis of genome-wide association studies for chronic obstructive pulmonary disease in the context of biological pathways S Mount, E Cirillo, K Stewart, S Coort, CT Evelo, A Wesselius, MP Zeegers, ... American journal of respiratory and critical care medicine 200 (11), 1439-1441, 2019 | 2 | 2019 |
| Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services. F Ehrhart, J Melius, E Cirillo, M Kutmon, EL Willighagen, SL Coort, ... F1000Research 7, ELIXIR-1390, 2018 | 2 | 2018 |
| Bridging Clinical and Genomic Knowledge: An Extension of the SPHN RDF Schema for Seamless Integration and FAIRification of Omics Data E van der Horst, D Unni, F Kopmels, J Armida, V Touré, W Franke, ... Preprints, 2023 | | 2023 |
| Glycerophospholipid biosynthetic pathway AMF PD, M Summer-Kutmon, E Willighagen, D Slenter, E Cirillo, ... | | 2023 |
| Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform E Grudzien, E van der Horst, F van den Bergh, MH Traka, D Ng, ... 14th International Conference on Semantic Web Applications and Tools for …, 2023 | | 2023 |
| Angiopoietin-like protein 8 regulatory pathway A Siddiqa, S Coort, E Cirillo, K Hanspers, E Willighagen, A Pico, ... | | 2021 |
| Mesodermal commitment pathway N Salomonis, K Hanspers, M Summer-Kutmon, E Cirillo, E Willighagen, ... | | 2021 |
