PDB2ENTROPY and PDB2TRENT: conformational and translational–rotational entropy from molecular ensembles F Fogolari, O Maloku, CJ Dongmo Foumthuim, A Corazza, G Esposito Journal of Chemical Information and Modeling 58 (7), 1319-1324, 2018 | 25 | 2018 |
Computational design of cyclic peptides for the customized oriented immobilization of globular proteins MA Soler, A Rodriguez, A Russo, AF Adedeji, CJD Foumthuim, ... Physical Chemistry Chemical Physics 19 (4), 2740-2748, 2017 | 24 | 2017 |
Accurate estimation of the entropy of rotation–translation probability distributions F Fogolari, CJ Dongmo Foumthuim, S Fortuna, MA Soler, A Corazza, ... Journal of chemical theory and computation 12 (1), 1-8, 2016 | 21 | 2016 |
Dynamics and thermodynamics of transthyretin association from molecular dynamics simulations CJ Dongmo Foumthuim, A Corazza, R Berni, G Esposito, F Fogolari BioMed Research International 2018 (1), 7480749, 2018 | 12 | 2018 |
TransportTools: A library for high-throughput analyses of internal voids in biomolecules and ligand transport through them J Brezovsky, AS Thirunavukarasu, B Surpeta, CE Sequeiros-Borja, ... Bioinformatics 38 (6), 1752-1753, 2022 | 11 | 2022 |
Can the roles of polar and non-polar moieties be reversed in non-polar solvents? CJD Foumthuim, M Carrer, M Houvet, T Škrbić, G Graziano, A Giacometti Physical Chemistry Chemical Physics 22 (44), 25848-25858, 2020 | 11 | 2020 |
Molecular dynamics simulations of β2-microglobulin interaction with hydrophobic surfaces CJD Foumthuim, A Corazza, G Esposito, F Fogolari Molecular BioSystems 13 (12), 2625-2637, 2017 | 9 | 2017 |
Solvent quality and solvent polarity in polypeptides CJD Foumthuim, A Giacometti Physical Chemistry Chemical Physics 25 (6), 4839-4853, 2023 | 5 | 2023 |
How perfluoroalkyl substances modify fluorinated self-assembled monolayer architectures: An electrochemical and computational study G Moro, CJD Foumthuim, M Spinaci, E Martini, D Cimino, E Balliana, ... Analytica Chimica Acta 1204, 339740, 2022 | 5 | 2022 |
Water will find its way: transport through narrow tunnels in hydrolases C Sequeiros-Borja, B Surpeta, AS Thirunavukarasu, ... Journal of Chemical Information and Modeling, 2024 | 2 | 2024 |
Insights on peptide topology in the computational design of protein ligands: the example of lysozyme binding peptides C Cantarutti, MC Vargas, CJD Foumthuim, M Dumoulin, S La Manna, ... Physical Chemistry Chemical Physics 23 (40), 23158-23172, 2021 | 2 | 2021 |
Rinmaker: a fast, versatile and reliable tool to determine residue interaction networks in proteins S Alvise, F Lorenzo, P Davide, M Jacopo, V Francesco, P Alberto, ... BMC Bioinformatics 24, 336, 2023 | 1 | 2023 |
Solvent quality and nonbiological oligomer folding: revisiting conventional paradigms CJD Foumthuim, T Arcangeli, T Škrbić, A Giacometti Soft Matter 20 (32), 6507-6527, 2024 | | 2024 |
Exploring rare events of water transport in and out of buried active sites of hydrolytic enzymes AS Thirunavukarasu, CJD Foumthuim, J Brezovsky FEBS OPEN BIO 11, 92-92, 2021 | | 2021 |
Can the roles of polar and non-polar moieties be reversed in non-polar solvents? CJ Dongmo, M Carrer, M Houvet, T Skrbic, G Graziano, A Giacometti arXiv preprint arXiv:2010.06332, 2020 | | 2020 |
Molecular Dynamics simulations of amyloidogenic proteins. Unfolding, misfolding and aggregation. CJ Dongmo Foumthuim Università degli Studi di Udine, 2018 | | 2018 |
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