Philip Clausen

Citado por

	Total	Desde 2019
Citas	2092	2056
Índice h	10	10
Índice i10	12	12

660

330

165

495

2017201820192020202120222023202413 17 87 228 337 470 655 271

Acceso público

Ver todo

19 artículos

0 artículos

disponibles

no disponibles

Basado en requisitos de financiación

Coautores

Ole LundTechnical University of DenmarkDirección de correo verificada de dtu.dk
Frank AarestrupTechnical University of Denmark, DTUDirección de correo verificada de food.dtu.dk
Derya Aytan-AktugPostdoctoral researcher, Technical University of DenmarkDirección de correo verificada de food.dtu.dk
A Ferrer FlorensaPhD at the National Food Institue, DTUDirección de correo verificada de food.dtu.dk
Henrik HasmanStatens Serum InstitutDirección de correo verificada de hasman.dk
Ea ZankariDirección de correo verificada de cbs.dtu.dk
Patrick MunkAssistant Professor, Technical University of DenmarkDirección de correo verificada de food.dtu.dk
Rolf Sommer KaasResearch ScientistDirección de correo verificada de food.dtu.dk
Edward C HolmesUniversity of SydneyDirección de correo verificada de sydney.edu.au
Michelle WilleCentre for Pathogen Genomics, Department of Microbiology and Immunology, University of MelbourneDirección de correo verificada de unimelb.edu.au
Vanessa Rossetto MarcelinoDECRA Research Fellow & Group Leader at the University of MelbourneDirección de correo verificada de unimelb.edu.au
James DavisComputational Biologist, Argonne National LaboratoryDirección de correo verificada de anl.gov
Marcus NguyenUniversity of ChicagoDirección de correo verificada de uchicago.edu
Frank HansenProfessor emeritus, Copenhagen UniversityDirección de correo verificada de math.ku.dk
Niels Frimodt-MollerProfessor of clinical microbiologyDirección de correo verificada de regionh.dk
Anette HammerumStatens Serum InstitutDirección de correo verificada de ssi.dk
Barbara Juliane HolzknechtHerlev and Gentofte HospitalDirección de correo verificada de regionh.dk
Roddy Jorquera CifuentesInstituto Oncológico, Fundación Arturo López Pérez, Santiago. ChileDirección de correo verificada de falp.org
David HolmesDirector, Center for Bioinformatics and Genome Biology, Fundacion Ciencia y VidaDirección de correo verificada de cienciavida.cl
Carolina González-RosalesPostdoctoral Scientist, Linnaeus UniversityDirección de correo verificada de lnu.se

Seguir

Philip Clausen

Technical University of Denmark

Dirección de correo verificada de dtu.dk

Bioinformatics


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019	697	2019
Rapid and precise alignment of raw reads against redundant databases with KMA PTLC Clausen, FM Aarestrup, O Lund BMC bioinformatics 19, 1-8, 2018	501	2018
ResFinder–an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes AF Florensa, RS Kaas, PTLC Clausen, D Aytan-Aktug, FM Aarestrup Microbial genomics 8 (1), 000748, 2022	213	2022
Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022	189	2022
Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data PTLC Clausen, E Zankari, FM Aarestrup, O Lund Journal of Antimicrobial Chemotherapy 71 (9), 2484-2488, 2016	178	2016
CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data VR Marcelino, PTLC Clausen, JP Buchmann, M Wille, JR Iredell, W Meyer, ... Genome biology 21, 1-15, 2020	114	2020
LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from … H Hasman, PTLC Clausen, H Kaya, F Hansen, JD Knudsen, M Wang, ... Journal of Antimicrobial Chemotherapy 74 (6), 1473-1476, 2019	62	2019
Prediction of acquired antimicrobial resistance for multiple bacterial species using neural networks D Aytan-Aktug, PTLC Clausen, V Bortolaia, FM Aarestrup, O Lund Msystems 5 (1), 10.1128/msystems. 00774-19, 2020	31	2020
P., van de Schans RS Hendriksen, P Munk, P Njage, B van Bunnik, L McNally, ... MGM, Zuidema, T., de Roda Husman, AM, Rasmussen, S., Petersen, B., Amid, C …, 2019	22	2019
Improved resistance prediction in Mycobacterium tuberculosis by better handling of insertions and deletions, premature stop codons, and filtering of non-informative sites CH Johnsen, PTLC Clausen, FM Aarestrup, O Lund Frontiers in microbiology 10, 446506, 2019	11	2019
Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study VA Janes, S Matamoros, P Munk, PTLC Clausen, SM Koekkoek, ... The Lancet Microbe 3 (8), e588-e597, 2022	10	2022
MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads MB Hallgren, S Overballe-Petersen, O Lund, H Hasman, PTLC Clausen Biology Methods and Protocols 6 (1), bpab008, 2021	10	2021
PlasmidHostFinder: prediction of plasmid hosts using random forest D Aytan-Aktug, PTLC Clausen, J Szarvas, P Munk, S Otani, M Nguyen, ... Msystems 7 (2), e01180-21, 2022	9	2022
Predicting antimicrobial resistance using partial genome alignments D Aytan-Aktug, M Nguyen, PTLC Clausen, RL Stevens, FM Aarestrup, ... Msystems 6 (3), 10.1128/msystems. 00185-21, 2021	9	2021
Improved ontology for eukaryotic single-exon coding sequences in biological databases R Jorquera, C González, P Clausen, B Petersen, DS Holmes Database 2018, bay089, 2018	9	2018
CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole‐genome sequencing data M Yusibova, H Hasman, PTLC Clausen, F Imkamp, K Wagner, ... Helicobacter 25 (6), e12752, 2020	7	2020
Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering J Ahrenfeldt, M Waisi, IC Loft, PTLC Clausen, R Allesøe, J Szarvas, ... Scientific reports 10 (1), 3033, 2020	6	2020
SourceFinder: A machine-learning-based tool for identification of chromosomal, plasmid, and bacteriophage sequences from assemblies D Aytan-Aktug, V Grigorjev, J Szarvas, PTLC Clausen, P Munk, M Nguyen, ... Microbiology Spectrum 10 (6), e02641-22, 2022	4	2022
Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining PTLC Clausen Bioinformatics 39 (1), btac774, 2023	3	2023
Automated download and clean-up of family-specific databases for kmer-based virus identification RL Allesøe, CK Lemvigh, MVT Phan, PTLC Clausen, AF Florensa, ... Bioinformatics 37 (5), 705-710, 2021	3	2021

El sistema no puede realizar la operación en estos momentos. Inténtalo de nuevo más tarde.

Artículos 1–20

Citas por año

Citas duplicadas

Citas combinadas

Añadir coautoresCoautores

Seguir

Citado por

Coautores