| Genomic hallmarks and structural variation in metastatic prostate cancer DA Quigley, HX Dang, SG Zhao, P Lloyd, R Aggarwal, JJ Alumkal, A Foye, ... Cell 174 (3), 758-769. e9, 2018 | 557 | 2018 |
| Overview of BioCreative II gene normalization AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ... Genome biology 9, 1-19, 2008 | 403 | 2008 |
| Analysis of 589,306 genomes identifies individuals resilient to severe Mendelian childhood diseases R Chen, L Shi, J Hakenberg, B Naughton, P Sklar, J Zhang, H Zhou, ... Nature biotechnology 34 (5), 531-538, 2016 | 336 | 2016 |
| Predicting the clinical impact of human mutation with deep neural networks L Sundaram, H Gao, SR Padigepati, JF McRae, Y Li, JA Kosmicki, ... Nature genetics 50 (8), 1161-1170, 2018 | 301 | 2018 |
| What makes a gene name? Named entity recognition in the biomedical literature U Leser, J Hakenberg Briefings in bioinformatics 6 (4), 357-369, 2005 | 232 | 2005 |
| A comprehensive benchmark of kernel methods to extract protein–protein interactions from literature D Tikk, P Thomas, P Palaga, J Hakenberg, U Leser PLoS computational biology 6 (7), e1000837, 2010 | 220 | 2010 |
| AliBaba: PubMed as a graph C Plake, T Schiemann, M Pankalla, J Hakenberg, U Leser Bioinformatics 22 (19), 2444-2445, 2006 | 197 | 2006 |
| Inter-species normalization of gene mentions with GNAT J Hakenberg, C Plake, R Leaman, M Schroeder, G Gonzalez Bioinformatics 24 (16), i126-i132, 2008 | 153 | 2008 |
| Acute Intermittent Porphyria: Predicted Pathogenicity of HMBS Variants Indicates Extremely Low Penetrance of the Autosomal Dominant Disease B Chen, C Solis‐Villa, J Hakenberg, W Qiao, RR Srinivasan, M Yasuda, ... Human mutation 37 (11), 1215-1222, 2016 | 152 | 2016 |
| MAPPP: MHC class I antigenic peptide processing prediction. J Hakenberg, AK Nussbaum, H Schild, HG Rammensee, C Kuttler, ... Applied bioinformatics 2 (3), 155-158, 2003 | 129 | 2003 |
| Introducing meta-services for biomedical information extraction F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ... Genome biology 9 (2), 1-11, 2008 | 95 | 2008 |
| Gene mention normalization and interaction extraction with context models and sentence motifs J Hakenberg, C Plake, L Royer, H Strobelt, U Leser, M Schroeder Genome biology 9 (2), 1-16, 2008 | 93 | 2008 |
| The GNAT library for local and remote gene mention normalization J Hakenberg, M Gerner, M Haeussler, I Solt, C Plake, M Schroeder, ... Bioinformatics 27 (19), 2769-2771, 2011 | 90 | 2011 |
| Towards effective sentence simplification for automatic processing of biomedical text S Jonnalagadda, L Tari, J Hakenberg, C Baral, G Gonzalez arXiv preprint arXiv:1001.4277, 2010 | 74 | 2010 |
| Disease-associated variants in different categories of disease located in distinct regulatory elements M Ma, Y Ru, LS Chuang, NY Hsu, LS Shi, J Hakenberg, WY Cheng, ... BMC genomics 16, 1-13, 2015 | 69 | 2015 |
| Efficient extraction of protein-protein interactions from full-text articles J Hakenberg, R Leaman, NH Vo, S Jonnalagadda, R Sullivan, C Miller, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 481-494, 2010 | 58 | 2010 |
| LLL’05 challenge: Genic interaction extraction-identification of language patterns based on alignment and finite state automata J Hakenberg, C Plake, U Leser, H Kirsch, D Rebholz-Schuhmann Proceedings of the 4th Learning Language in Logic workshop (LLL05), 38-45, 2005 | 55 | 2005 |
| Finding kinetic parameters using text mining J Hakenberg, S Schmeier, A Kowald, E Klipp, U Leser OMICS: A Journal of Integrative Biology 8 (2), 131-152, 2004 | 54 | 2004 |
| Incremental information extraction using relational databases L Tari, PH Tu, J Hakenberg, Y Chen, TC Son, G Gonzalez, C Baral IEEE Transactions on Knowledge and Data Engineering 24 (1), 86-99, 2010 | 51 | 2010 |
| Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ... BMC bioinformatics 10, 1-15, 2009 | 50 | 2009 |
Ulf LeserKnowledge Management in Bioinformatics, Humboldt-Universität zu BerlinVerified email at informatik.hu-berlin.de
