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Gayathri Athreya
Gayathri Athreya
university of arizona
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Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
BF Keele, EE Giorgi, JF Salazar-Gonzalez, JM Decker, KT Pham, ...
Proceedings of the National Academy of Sciences 105 (21), 7552-7557, 2008
23112008
Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing
JF Salazar-Gonzalez, E Bailes, KT Pham, MG Salazar, MB Guffey, ...
Journal of virology 82 (8), 3952-3970, 2008
6922008
Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants
MR Abrahams, JA Anderson, EE Giorgi, C Seoighe, K Mlisana, LH Ping, ...
Journal of virology 83 (8), 3556-3567, 2009
4932009
HIV sequence compendium 2001
C Kuiken, B Foley, B Hahn, P Marx, F McCutchan, J Mellors, S Wolinsky, ...
Theoretical Biology and Biophysics Group, Los Alamos National Laboratory …, 2001
2822001
Modeling sequence evolution in acute HIV-1 infection
HY Lee, EE Giorgi, BF Keele, B Gaschen, GS Athreya, ...
Journal of theoretical biology 261 (2), 341-360, 2009
2252009
Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases
IM Berry, R Ribeiro, M Kothari, G Athreya, M Daniels, HY Lee, W Bruno, ...
Journal of virology 81 (19), 10625-10635, 2007
1142007
Estimating time since infection in early homogeneous HIV-1 samples using a poisson model
EE Giorgi, B Funkhouser, G Athreya, AS Perelson, BT Korber, ...
BMC bioinformatics 11, 1-7, 2010
1082010
Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection
H Song, EE Giorgi, VV Ganusov, F Cai, G Athreya, H Yoon, O Carja, ...
Nature communications 9 (1), 1928, 2018
992018
A multiple-alignment based primer design algorithm for genetically highly variable DNA targets
J Brodin, M Krishnamoorthy, G Athreya, W Fischer, P Hraber, C Gleasner, ...
BMC bioinformatics 14, 1-9, 2013
512013
The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal …
IM Berry, G Athreya, M Kothari, M Daniels, WJ Bruno, B Korber, C Kuiken, ...
Epidemics 1 (4), 230-239, 2009
282009
Quantitating the multiplicity of infection with HIV-1 subtype C reveals a non-Poisson distribution of transmitted variants
MR Abrahams, JA Anderson, EE Giorgi, C Seoighe, K Mlisana, LH Ping, ...
J Virol 83 (8), 3556-3567, 2009
82009
WITHDRAWN: The evolutionary rate dynamically tracks changes in HIV-1 epidemics: Application of a simple method for optimizing the evolutionary rate in phylogenetic trees with …
IM Berry, G Athreya, M Kothari, M Daniels, WJ Bruno, B Korber, C Kuiken, ...
Epidemics, 2009
2009
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