| Cistrome: an integrative platform for transcriptional regulation studies T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ... Genome biology 12, 1-10, 2011 | 750 | 2011 |
| Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ... Nucleic acids research, gkw983, 2016 | 501 | 2016 |
| NOTCH1–RBPJ complexes drive target gene expression through dynamic interactions with superenhancers H Wang, C Zang, L Taing, KL Arnett, YJ Wong, WS Pear, SC Blacklow, ... Proceedings of the National Academy of Sciences 111 (2), 705-710, 2014 | 268 | 2014 |
| System and method for real-time, multi-user, interactive and collaborative environments on the web LB Taing US Patent 7,958,453, 2011 | 213 | 2011 |
| VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster, B Li, H Sun, T Li, ... BMC bioinformatics 19, 1-14, 2018 | 180 | 2018 |
| ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline Q Qin, S Mei, Q Wu, H Sun, L Li, L Taing, S Chen, F Li, T Liu, C Zang, ... BMC bioinformatics 17, 1-13, 2016 | 103 | 2016 |
| The development of “most” comprehension and its potential dependence on counting ability in preschoolers J Halberda, L Taing, J Lidz Language Learning and Development 4 (2), 99-121, 2008 | 80 | 2008 |
| CDK4/6 inhibition reprograms the breast cancer enhancer landscape by stimulating AP-1 transcriptional activity AC Watt, P Cejas, MJ DeCristo, O Metzger-Filho, EYN Lam, X Qiu, ... Nature Cancer 2 (1), 34-48, 2021 | 69 | 2021 |
| CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human B Qin, M Zhou, Y Ge, L Taing, T Liu, Q Wang, S Wang, J Chen, L Shen, ... Bioinformatics 28 (10), 1411-1412, 2012 | 40 | 2012 |
| Genome-wide identification and characterization of Notch transcription complex–binding sequence-paired sites in leukemia cells E Severson, KL Arnett, H Wang, C Zang, L Taing, H Liu, WS Pear, ... Science Signaling 10 (477), eaag1598, 2017 | 37 | 2017 |
| Liquid biopsy epigenomic profiling for cancer subtyping SC Baca, JH Seo, MP Davidsohn, B Fortunato, K Semaan, S Sotudian, ... Nature medicine 29 (11), 2737-2741, 2023 | 32 | 2023 |
| Mechanisms of response and resistance to combined decitabine and ipilimumab for advanced myeloid disease L Penter, Y Liu, JO Wolff, L Yang, L Taing, A Jhaveri, J Southard, M Patel, ... Blood 141 (15), 1817-1830, 2023 | 30 | 2023 |
| Transcriptional regulator CNOT3 defines an aggressive colorectal cancer subtype P Cejas, A Cavazza, CN Yandava, V Moreno, D Horst, J Moreno-Rubio, ... Cancer research 77 (3), 766-779, 2017 | 29 | 2017 |
| CoBRA: containerized bioinformatics workflow for reproducible ChIP/ATAC-seq analysis X Qiu, AS Feit, A Feiglin, Y Xie, N Kesten, L Taing, J Perkins, S Gu, Y Li, ... Genomics, Proteomics and Bioinformatics 19 (4), 652-661, 2021 | 27 | 2021 |
| FiTAc-seq: fixed-tissue ChIP-seq for H3K27ac profiling and super-enhancer analysis of FFPE tissues A Font-Tello, N Kesten, Y Xie, L Taing, D Varešlija, LS Young, AA Hamid, ... Nature Protocols, 1-16, 2020 | 25 | 2020 |
| CistromeFinder for ChIP-seq and DNase-seq data reuse H Sun, B Qin, T Liu, Q Wang, J Liu, J Wang, X Lin, Y Yang, L Taing, ... Bioinformatics 29 (10), 1352-1354, 2013 | 22 | 2013 |
| Subependymal giant cell astrocytomas are characterized by mTORC1 hyperactivation, a very low somatic mutation rate, and a unique gene expression profile K Giannikou, Z Zhu, J Kim, KD Winden, ME Tyburczy, D Marron, JS Parker, ... Modern Pathology 34 (2), 264-279, 2021 | 18 | 2021 |
| Cistrome Data Browser: integrated search, analysis and visualization of chromatin data L Taing, A Dandawate, S L’Yi, N Gehlenborg, M Brown, CA Meyer Nucleic Acids Research 52 (D1), D61-D66, 2024 | 10 | 2024 |
| Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA L Yang, J Wang, J Altreuter, A Jhaveri, CJ Wong, L Song, J Fu, L Taing, ... Nature Protocols 18 (8), 2404-2414, 2023 | 8 | 2023 |
| Cross-site concordance evaluation of tumor DNA and RNA sequencing platforms for the CIMAC-CIDC Network Z Zeng, J Fu, C Cibulskis, A Jhaveri, C Gumbs, B Das, ... Clinical Cancer Research 27 (18), 5049-5061, 2021 | 6 | 2021 |
