Matthew L. Bendall
Matthew L. Bendall
Weill Cornell Medicine, Division of Infectious Diseases
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Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls
E Castro-Nallar, ML Bendall, M Pérez-Losada, S Sabuncyan, ...
PeerJ 3, e1140, 2015
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ...
The ISME journal 10 (7), 1589-1601, 2016
The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea …
HD Bracken-Grissom, ST Ahyong, RD Wilkinson, RM Feldmann, ...
Systematic Biology 63 (4), 457-479, 2014
Pathoscope: species identification and strain attribution with unassembled sequencing data
OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ...
Genome research 23 (10), 1721-1729, 2013
Dual transcriptomic profiling of host and microbiota during health and disease in pediatric asthma
M Pérez-Losada, E Castro-Nallar, ML Bendall, RJ Freishtat, KA Crandall
PloS one 10 (6), e0131819, 2015
Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression
ML Bendall, M de Mulder, LP Iñiguez, A Lecanda-Sánchez, ...
PLoS computational biology 15 (9), e1006453, 2019
Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry
RA Heins, X Cheng, S Nath, K Deng, BP Bowen, DC Chivian, S Datta, ...
ACS chemical biology 9 (9), 2082-2091, 2014
Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1
ML Bendall, K Luong, KM Wetmore, M Blow, J Korlach, A Deutschbauer, ...
Journal of bacteriology 195 (21), 4966-4974, 2013
Phylogenetic relationships and molecular adaptation dynamics of human rhinoviruses
N Lewis-Rogers, ML Bendall, KA Crandall
Molecular biology and evolution 26 (5), 969-981, 2009
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis
VK Shanmugam, D Jones, S McNish, ML Bendall, KA Crandall
Clinical and experimental dermatology 44 (8), 882-892, 2019
Evaluation of haplotype callers for next-generation sequencing of viruses
A Eliseev, KM Gibson, P Avdeyev, D Novik, ML Bendall, M Pérez-Losada, ...
Infection, Genetics and Evolution 82, 104277, 2020
SARS-CoV-2 infection mediates differential expression of human endogenous retroviruses and long interspersed nuclear elements
JL Marston, M Greenig, M Singh, ML Bendall, RRR Duarte, C Feschotte, ...
JCI insight 6 (24), 2021
Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon CancersHERV Expression in Prostate, Breast, and Colon Cancers
MC Steiner, JL Marston, LP Iñiguez, ML Bendall, KB Chiappinelli, ...
Cancer research 81 (13), 3449-3460, 2021
Human endogenous retrovirus expression is associated with head and neck cancer and differential survival
AR Kolbe, ML Bendall, AT Pearson, D Paul, DF Nixon, M Pérez-Losada, ...
Viruses 12 (9), 956, 2020
Benchmark evaluation of true single molecular sequencing to determine cystic fibrosis airway microbiome diversity
A Hahn, ML Bendall, KM Gibson, H Chaney, I Sami, GF Perez, ...
Frontiers in Microbiology 9, 1069, 2018
Long-read, whole-genome shotgun sequence data for five model organisms. Sci Data 1: 140045
KE Kim, P Peluso, P Babayan, PJ Yeadon, C Yu, WW Fisher, CS Chin, ...
A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing
KM Gibson, K Jair, AD Castel, ML Bendall, B Wilbourn, JA Jordan, ...
Scientific Reports 10 (1), 1-18, 2020
Expression of human endogenous retroviruses in systemic lupus erythematosus: multiomic integration with gene expression
N Stearrett, T Dawson, A Rahnavard, P Bachali, ML Bendall, C Zeng, ...
Frontiers in Immunology 12, 661437, 2021
Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus
LP Iñiguez, M de Mulder Rougvie, N Stearrett, RB Jones, CE Ormsby, ...
Proceedings of the National Academy of Sciences 116 (43), 21350-21351, 2019
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