Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls E Castro-Nallar, ML Bendall, M Pérez-Losada, S Sabuncyan, ... PeerJ 3, e1140, 2015 | 235 | 2015 |
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016 | 203 | 2016 |
The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea … HD Bracken-Grissom, ST Ahyong, RD Wilkinson, RM Feldmann, ... Systematic Biology 63 (4), 457-479, 2014 | 150 | 2014 |
Pathoscope: species identification and strain attribution with unassembled sequencing data OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ... Genome research 23 (10), 1721-1729, 2013 | 145 | 2013 |
Dual transcriptomic profiling of host and microbiota during health and disease in pediatric asthma M Pérez-Losada, E Castro-Nallar, ML Bendall, RJ Freishtat, KA Crandall PloS one 10 (6), e0131819, 2015 | 107 | 2015 |
Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression ML Bendall, M de Mulder, LP Iñiguez, A Lecanda-Sánchez, ... PLoS computational biology 15 (9), e1006453, 2019 | 74 | 2019 |
Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry RA Heins, X Cheng, S Nath, K Deng, BP Bowen, DC Chivian, S Datta, ... ACS chemical biology 9 (9), 2082-2091, 2014 | 61 | 2014 |
Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1 ML Bendall, K Luong, KM Wetmore, M Blow, J Korlach, A Deutschbauer, ... Journal of bacteriology 195 (21), 4966-4974, 2013 | 41 | 2013 |
Phylogenetic relationships and molecular adaptation dynamics of human rhinoviruses N Lewis-Rogers, ML Bendall, KA Crandall Molecular biology and evolution 26 (5), 969-981, 2009 | 41 | 2009 |
Bioconda: Sustainable and comprehensive software distribution for the life sciences R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... Nature Methods 15 (7), 475-476, 2018 | 38 | 2018 |
Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis VK Shanmugam, D Jones, S McNish, ML Bendall, KA Crandall Clinical and experimental dermatology 44 (8), 882-892, 2019 | 37 | 2019 |
Evaluation of haplotype callers for next-generation sequencing of viruses A Eliseev, KM Gibson, P Avdeyev, D Novik, ML Bendall, M Pérez-Losada, ... Infection, Genetics and Evolution 82, 104277, 2020 | 34 | 2020 |
SARS-CoV-2 infection mediates differential expression of human endogenous retroviruses and long interspersed nuclear elements JL Marston, M Greenig, M Singh, ML Bendall, RRR Duarte, C Feschotte, ... JCI insight 6 (24), 2021 | 17 | 2021 |
Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon CancersHERV Expression in Prostate, Breast, and Colon Cancers MC Steiner, JL Marston, LP Iñiguez, ML Bendall, KB Chiappinelli, ... Cancer research 81 (13), 3449-3460, 2021 | 17 | 2021 |
Human endogenous retrovirus expression is associated with head and neck cancer and differential survival AR Kolbe, ML Bendall, AT Pearson, D Paul, DF Nixon, M Pérez-Losada, ... Viruses 12 (9), 956, 2020 | 17 | 2020 |
Benchmark evaluation of true single molecular sequencing to determine cystic fibrosis airway microbiome diversity A Hahn, ML Bendall, KM Gibson, H Chaney, I Sami, GF Perez, ... Frontiers in Microbiology 9, 1069, 2018 | 11 | 2018 |
Long-read, whole-genome shotgun sequence data for five model organisms. Sci Data 1: 140045 KE Kim, P Peluso, P Babayan, PJ Yeadon, C Yu, WW Fisher, CS Chin, ... | 11 | 2014 |
A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing KM Gibson, K Jair, AD Castel, ML Bendall, B Wilbourn, JA Jordan, ... Scientific Reports 10 (1), 1-18, 2020 | 10 | 2020 |
Expression of human endogenous retroviruses in systemic lupus erythematosus: multiomic integration with gene expression N Stearrett, T Dawson, A Rahnavard, P Bachali, ML Bendall, C Zeng, ... Frontiers in Immunology 12, 661437, 2021 | 9 | 2021 |
Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus LP Iñiguez, M de Mulder Rougvie, N Stearrett, RB Jones, CE Ormsby, ... Proceedings of the National Academy of Sciences 116 (43), 21350-21351, 2019 | 9 | 2019 |