| The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ... Nucleic acids research 45 (D1), D362-D368, 2017 | 6822 | 2017 |
| eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2018 | 2738 | 2018 |
| eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic Acids Research 44 (November 2015), 286-293, 2015 | 1912 | 2015 |
| Viruses. STRING: A virus-host protein-protein interaction database H Cook, N Doncheva, D Szklarczyk, C von Mering, L Jensen Viruses 10 (10), 519, 2018 | 125 | 2018 |
| miRandola 2017: a curated knowledge base of non-invasive biomarkers F Russo, S Di Bella, F Vannini, G Berti, F Scoyni, HV Cook, A Santos, ... Nucleic Acids Research 46 (D1), D354-D359, 2017 | 71 | 2017 |
| Virulence genes in a probiotic E. oli product with a recorded long history of safe use T Wassenaar, A Zschüttig, C Beimfohr, T Geske, C Auerbach, H Cook, ... European Journal of Microbiology and Immunology 5 (1), 81-93, 2015 | 45 | 2015 |
| Sigma factors in a thousand E. coli genomes H Cook, DW Ussery Environmental microbiology 15 (12), 3121-3129, 2013 | 42 | 2013 |
| A Guide to Dictionary-Based Text Mining HV Cook, LJ Jensen Bioinformatics and Drug Discovery, 73-89, 2019 | 23 | 2019 |
| A dictionary-and rule-based system for identification of bacteria and habitats in text HV Cook, E Pafilis, LJ Jensen Proceedings of the 4th BioNLP Shared Task Workshop, 50-55, 2016 | 21 | 2016 |
| An Integrative Approach to Virus–Host Protein–Protein Interactions HV Cook, LJ Jensen Computational Cell Biology, 175-196, 2018 | 7 | 2018 |
| Creation and evaluation of a dictionary-based tagger for virus species and proteins H Cook, R Berzins, CL Rodrıguez, JM Cejuela, LJ Jensen BioNLP 2017, 91-98, 2017 | 2 | 2017 |
