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Denis Torre
Denis Torre
Icahn School of Medicine ad Mount Sinai
Dirección de correo verificada de mssm.edu
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Massive mining of publicly available RNA-seq data from human and mouse
A Lachmann, D Torre, AB Keenan, KM Jagodnik, HJ Lee, L Wang, ...
Nature communications 9 (1), 1-10, 2018
4272018
The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations
AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ...
Cell systems 6 (1), 13-24, 2018
3102018
ChEA3: transcription factor enrichment analysis by orthogonal omics integration
AB Keenan, D Torre, A Lachmann, AK Leong, ML Wojciechowicz, V Utti, ...
Nucleic acids research 47 (W1), W212-W224, 2019
2482019
BioJupies: automated generation of interactive notebooks for RNA-Seq data analysis in the cloud
D Torre, A Lachmann, A Ma’ayan
Cell systems 7 (5), 556-561. e3, 2018
1712018
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data
A Koleti, R Terryn, V Stathias, C Chung, DJ Cooper, JP Turner, D Vidović, ...
Nucleic acids research 46 (D1), D558-D566, 2018
1352018
eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks
DJB Clarke, MV Kuleshov, BM Schilder, D Torre, ME Duffy, AB Keenan, ...
Nucleic acids research 46 (W1), W171-W179, 2018
942018
Trained immunity-promoting nanobiologic therapy suppresses tumor growth and potentiates checkpoint inhibition
B Priem, MMT van Leent, AJP Teunissen, AM Sofias, VP Mourits, ...
Cell 183 (3), 786-801. e19, 2020
642020
Toward a fine-scale population health monitoring system
GM Belbin, S Cullina, S Wenric, ER Soper, BS Glicksberg, D Torre, ...
Cell 184 (8), 2068-2083. e11, 2021
572021
Geneshot: search engine for ranking genes from arbitrary text queries
A Lachmann, BM Schilder, ML Wojciechowicz, D Torre, MV Kuleshov, ...
Nucleic acids research 47 (W1), W571-W577, 2019
412019
Cell-autonomous and cell non-autonomous downregulation of tumor suppressor DAB2IP by microRNA-149-3p promotes aggressiveness of cancer cells
A Bellazzo, G Di Minin, E Valentino, D Sicari, D Torre, L Marchionni, ...
Cell Death & Differentiation 25 (7), 1224-1238, 2018
312018
FAIRshake: toolkit to evaluate the FAIRness of research digital resources
DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ...
Cell systems 9 (5), 417-421, 2019
302019
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center
V Stathias, A Koleti, D Vidović, DJ Cooper, KM Jagodnik, R Terryn, ...
Scientific data 5 (1), 1-14, 2018
222018
KEA3: improved kinase enrichment analysis via data integration
MV Kuleshov, Z Xie, ABK London, J Yang, JE Evangelista, A Lachmann, ...
Nucleic Acids Research 49 (W1), W304-W316, 2021
172021
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses
D Torre, P Krawczuk, KM Jagodnik, A Lachmann, Z Wang, L Wang, ...
Scientific data 5 (1), 1-10, 2018
122018
FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources
DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ...
BioRxiv, 657676, 2019
112019
PRDM15 is a key regulator of metabolism critical to sustain B-cell lymphomagenesis
S Mzoughi, JY Fong, D Papadopoli, CM Koh, L Hulea, P Pigini, F Di Tullio, ...
Nature communications 11 (1), 1-14, 2020
102020
Interoperable RNA-Seq analysis in the cloud
A Lachmann, DJB Clarke, D Torre, Z Xie, A Ma'ayan
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (6), 194521, 2020
102020
Rapid, scalable assessment of SARS-CoV-2 cellular immunity by whole-blood PCR
M Schwarz, D Torre, D Lozano-Ojalvo, AT Tan, T Tabaglio, S Mzoughi, ...
Nature biotechnology, 1-10, 2022
92022
The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations. Cell Syst 2018; 6: 13–24
AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ...
Epub 2017/12/05. doi: 10.1016/j. cels. 2017.11. 001. PubMed PMID: 29199020, 0
6
Clonally expanded CD8 T cells characterize amyotrophic lateral sclerosis-4
L Campisi, S Chizari, JSY Ho, A Gromova, FJ Arnold, L Mosca, X Mei, ...
Nature 606 (7916), 945-952, 2022
42022
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