Akira R. Kinjo
Akira R. Kinjo
Department of Mathematics, Universiti Brunei Darussalam
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Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation
Y Minezaki, K Homma, AR Kinjo, K Nishikawa
Journal of molecular biology 359 (4), 1137-1149, 2006
Neuro-symbolic representation learning on biological knowledge graphs
M Alshahrani, MA Khan, O Maddouri, AR Kinjo, N Queralt-Rosinach, ...
Bioinformatics 33 (17), 2723-2730, 2017
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format
AR Kinjo, H Suzuki, R Yamashita, Y Ikegawa, T Kudou, R Igarashi, ...
Nucleic acids research 40 (D1), D453-D460, 2012
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures
AR Kinjo, GJ Bekker, H Suzuki, Y Tsuchiya, T Kawabata, Y Ikegawa, ...
Nucleic Acids Research, gkw962, 2016
Predicting absolute contact numbers of native protein structure from amino acid sequence
AR Kinjo, K Horimoto, K Nishikawa
Proteins: Structure, Function, and Bioinformatics 58 (1), 158-165, 2005
New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)
AR Kinjo, GJ Bekker, H Wako, S Endo, Y Tsuchiya, H Sato, H Nishi, ...
Protein Science 27 (1), 95-102, 2018
Molmil: a molecular viewer for the PDB and beyond
GJ Bekker, H Nakamura, AR Kinjo
Journal of Cheminformatics 8, 1-5, 2016
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1, 1-19, 2010
Protein structure databases with new web services for structural biology and biomedical research
DM Standley, AR Kinjo, K Kinoshita, H Nakamura
Briefings in bioinformatics 9 (4), 276-285, 2008
Comprehensive structural classification of ligand-binding motifs in proteins
AR Kinjo, H Nakamura
Structure 17 (2), 234-246, 2009
Competition between protein folding and aggregation with molecular chaperones in crowded solutions: insight from mesoscopic simulations
AR Kinjo, S Takada
Biophysical journal 85 (6), 3521-3531, 2003
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ...
Journal of biomedical semantics 4, 1-17, 2013
Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: statics
AR Kinjo, S Takada
Physical Review E 66 (3), 031911, 2002
Mechanism of evolution by genetic assimilation: Equivalence and independence of genetic mutation and epigenetic modulation in phenotypic expression.
K Nishikawa, AR Kinjo
Biophysical Reviews 10 (2), 667–676, 2018
CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks
AR Kinjo, K Nishikawa
BMC bioinformatics 7, 1-8, 2006
Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins
AR Kinjo, K Nishikawa
Bioinformatics 20 (16), 2504-2508, 2004
Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: dynamics
AR Kinjo, S Takada
Physical Review E 66 (5), 051902, 2002
Recoverable one-dimensional encoding of three-dimensional protein structures
AR Kinjo, K Nishikawa
Bioinformatics 21 (10), 2167-2170, 2005
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
T Katayama, MD Wilkinson, R Vos, T Kawashima, S Kawashima, ...
Journal of biomedical semantics 2, 1-18, 2011
Bridging the gap between single-template and fragment based protein structure modeling using Spanner
M Lis, T Kim, JJ Sarmiento, D Kuroda, HV Dinh, AR Kinjo, K Amada, ...
Immunome Research 7 (1), 1, 2011
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Artículos 1–20