| Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1574 | 2005 |
| Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis HD Park, KM Guinn, MI Harrell, R Liao, MI Voskuil, M Tompa, ... Molecular microbiology 48 (3), 833-843, 2003 | 828 | 2003 |
| Finding motifs using random projections J Buhler, M Tompa Proceedings of the fifth annual international conference on Computational …, 2001 | 808 | 2001 |
| How to share a secret with cheaters M Tompa, H Woll journal of Cryptology 1 (3), 133-138, 1989 | 652 | 1989 |
| Discovery of regulatory elements by a computational method for phylogenetic footprinting M Blanchette, M Tompa Genome research 12 (5), 739-748, 2002 | 435 | 2002 |
| Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline Z Weinberg, JE Barrick, Z Yao, A Roth, JN Kim, J Gore, JX Wang, ER Lee, ... Nucleic acids research 35 (14), 4809-4819, 2007 | 384 | 2007 |
| YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation S Sinha, M Tompa Nucleic acids research 31 (13), 3586-3588, 2003 | 322 | 2003 |
| Random self-reducibility and zero knowledge interactive proofs of possession of information M Tompa, H Woll 28th Annual Symposium on Foundations of Computer Science (sfcs 1987), 472-482, 1987 | 313 | 1987 |
| A statistical method for finding transcription factor binding sites. S Sinha, M Tompa ISMB 8, 344-354, 2000 | 295 | 2000 |
| Discovery of novel transcription factor binding sites by statistical overrepresentation S Sinha, M Tompa Nucleic acids research 30 (24), 5549-5560, 2002 | 289 | 2002 |
| An exact method for finding short motifs in sequences, with application to the ribosome binding site problem. M Tompa ISMB 99, 262-271, 1999 | 273 | 1999 |
| PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences S Sinha, M Blanchette, M Tompa BMC bioinformatics 5, 1-17, 2004 | 253 | 2004 |
| Algorithms for phylogenetic footprinting M Blanchette Proceedings of the fifth annual international conference on Computational …, 2001 | 244 | 2001 |
| FootPrinter: a program designed for phylogenetic footprinting M Blanchette, M Tompa Nucleic acids research 31 (13), 3840-3842, 2003 | 238 | 2003 |
| Space-bounded hierarchies and probabilistic computations WL Ruzzo, J Simon, M Tompa Proceedings of the fourteenth annual ACM symposium on Theory of computing …, 1982 | 175 | 1982 |
| Two applications of inductive counting for complementation problems A Borodin, SA Cook, PW Dymond, WL Ruzzo, M Tompa SIAM Journal on computing 18 (3), 559-578, 1989 | 166 | 1989 |
| Evolutionarily conserved sequence elements that positively regulate IFN-γ expression in T cells M Shnyreva, WM Weaver, M Blanchette, SL Taylor, M Tompa, ... Proceedings of the National Academy of Sciences 101 (34), 12622-12627, 2004 | 156 | 2004 |
| A linear time algorithm for finding all maximal scoring subsequences. WL Ruzzo, M Tompa ISMB 99, 234-241, 1999 | 156 | 1999 |
| A time-space tradeoff for sorting on non-oblivious machines A Borodin, MJ Fischer, DG Kirkpatrick, NA Lynch, M Tompa 20th Annual Symposium on Foundations of Computer Science (sfcs 1979), 319-327, 1979 | 141 | 1979 |
| Time-space tradeoffs for computing functions, using connectivity properties of their circuits M Tompa Proceedings of the tenth annual ACM symposium on Theory of computing, 196-204, 1978 | 140 | 1978 |
Walter L. RuzzoProfessor, University of WashingtonVerified email at uw.edu
